On the fly column reordering is now (or at least once it has reached conda-forge) available in the latest #datavzrd version. I’ll be working on getting this to run in the paginated reports as well so it also becomes available for reports with millions of rows.
We are excited that our paper "Cleanifier: Contamination removal from microbial sequences using spaced seeds of a human pangenome index" is now published at Bioinformatics (doi.org/10.1093/bioi...).
You can find it at gitlab (gitlab.com/rahmannlab/c...) or install it via PyPI or Bioconda.
Alignoth: portable and interactive visualization of read alignments academic.oup.com/bioinformati... 🧬🖥️🧪
Code (Rust, MIT): github.com/alignoth/ali...
Demo: alignoth.github.io/preview.html
datavzrd.github.io
🚀 Our new paper on Alignoth just published in Bioinformatics!
Alignoth generates self-contained interactive HTML read alignment plots from BAM files – Rust-based, portable, and ideal for headless workflows.
📄 doi.org/10.1093/bioi...
#bioinformatics #genomics #rust @johanneskoester.bsky.social
After some quite time #datavzrd finally got a new release with an updated binning algorithm ensuring interesting datapoints don’t get swallowed up by one bin.
Working on more more features right now!
The official Datavzrd documentation now includes an AI (trained on docs, code and our paper) to answer all your questions: datavzrd.github.io/docs/index.h...
Huge thanks to @gurubase.bsky.social for supporting Open-Source software and making this possible! @johanneskoester.bsky.social
#rustbio 4.0 has been released. It harmonizes the error handling, improves the API, makes gap-open/extend behavior in pairwise alignment more intuitive and in-line with the literature, improves GFF parsing, and allows incremental building of the rank-select datastructure. github.com/rust-bio/rus...
Video
Felix Wiegand
Großer Erfolg für die #UDE 🎉: @dfg.de richtet den Sonderforschungsbereich 1752 "DYNAMO" ein. Ab dem 1. Oktober 2026 fördert sie die Forschung zur Verbesserung von Therapien gegen schwarzen #Hautkrebs mit 12,9 Millionen Euro. www.uni-due.de/2026-05-15-n...
#SFB
Jens Zentgraf
Matthias Flotho
4.0.0 (2026-06-12)
⚠ BREAKING CHANGES
Replace anyhow with typed thiserror errors (#674)
Change Phase conversion methods to use TryFrom for better error handling (#625)
for pairwise alignment, only...
AbstractMotivation. The first step when working with DNA data of human-derived microbiomes is to remove human contamination for two reasons. First, many co
