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Metagenomics, Software Engineering
Austin Richardson
I found where they deinterleave the trains
the astronauts are on the dark side quick everyone hide
A bit intrigued how useful the combination of a bit of coloring, formatting + a really fast terminal app (alacritty), can be for visually inspecting reads. This one had me realize these are all pretty much the same (contaminating) sequence 👇
2mo
1mo
1mo
Austin Richardson
Austin Richardson
gut fauna
🚨New preprint out! We present a foundational genomic resource of human gut microbiome viruses. It delivers high-quality, deeply curated data spanning taxonomy, predicted hosts, structures, and functions, providing a reference for gut virome research. (1/8) www.biorxiv.org/content/10.1...
Mar 31, 2025
💾 Prokka 1.15.6 is released! This is the last major release of Prokka. But don't be sad, because @oschwengers.bsky.social already has an excellent replacement called Bakta you can migrate to. #bioinformatics #microbiology #genomics github.com/tseemann/pro...
7mo
6mo
Samuel Lampa
The future This is probably the last release of Prokka. I won't be making any code changes except bug fixes. I will update the databases occasionally. I strongly recommend you use Bakta by @oschwen...
github.com
Release Heading into the sunset · tseemann/prokka
Taxonomy Time Machine now shows merges taxonomy.onecodex.com
1mo
Two-Word Horror
Tech snow day
When you buy a cutting board from bioinformaticians
7mo
7mo
Antonio Camargo
Austin Richardson
Apple's approach to protein structure is great for accessibility - & potentially biological realism - reasons. Eg, prediction could be achieved w/ smaller compute & the generative nature of prediction allows for multiple conformations A summary here: genomely.substack.com/p/simplefold...
Torsten Seemann
8mo