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1H R1ρ RD NMR reveals hidden DNA base-pairing intermediates. Enhanced quantification of cross-relaxation effects refines probing biomolecular dynamics. PMID:42091923, Nat Commun 2026, @NatureComms https://doi.org/10.1038/s41467-026-72559-6 #Medsky #Pharmsky #RNA #ASHG #ESHG 🧪
1H R1ρ Relaxation dispersion (RD) NMR experiments provide valuable atomic-level insights into transient, high-energy conformational states of biomolecules. However, cross-relaxation artifacts can hamper its interpretation and therefore limiting broader adoption. This study explicitly quantifies cross-relaxation effects on 1H R1ρ relaxation rates, extending the general applicability of ¹H R1ρ to probe dynamics at natural abundance. Artifacts were found to be negligible for neighbouring dipolar-coupled protons, >3 Å apart, and a concept for identification for protons less than 3 Å is provided. This approach revealed a second excited state (ES2) in DNA base-pairing that extends the well-established Watson-Crick-Franklin (WCF) ground state (GS) – Hoogsteen (HG) equilibrium. A structural model for ES2 is proposed based on evidence from 1H R1ρ RD, trapping via DNA modifications, metadynamics simulations, and DFT-based chemical shift calculations. ES2 was stabilised by the anticancer drug
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1H R1ρ relaxation identifies a hidden intermediate in DNA base-pairing | Nature Communications
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Shicheng Guo