Long-TREC: The Long-Reads Transcriptomics European Consortium. Next-generation transcriptome biology revealed by single-molecule sequencing technologies
LongTREC
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⏰Your very last chance for Early Registration for the #VALT symposium!
The early registration deadline is Today, April 30th.
📍 Valencia, Spain | 29 June to 1 July
🌞 Sunny days, Mediterranean vibes
🤝 Meaningful networking & new collaborations
🌊 And yes… the beach is waiting after the sessions
Thank you to everyone who has submitted an abstract for the #VALT Symposium! The VALT Scientific Committee will begin the evaluation process soon.
🔜 Results coming on 15 April!
Today is the last day to submit your abstract for the #VALT symposium.
Don’t miss the chance to contribute with your work and be part of this international event.
🔗 Submit your abstract here: longtrec.eu/VALT/
You have until the end of today ☀️
⏰ Last chance for Early Registration for the #VALT symposium!
The early registration deadline is just 2 days away: April 30th.
📍 Valencia, Spain | 29 June to 1 July
🌞 Sunny days, Mediterranean vibes
🤝 Meaningful networking & new collaborations
🌊 And yes… the beach is waiting after the sessions
The preliminary #VALT Scientific Programme was published last week! longtrec.eu/VALT/
Check the selected Talks and Flash talks!
👉 Still in time to join us at what is shaping up to be a super event! : lnkd.in/eXPG_6cY
We are pleased to announce that the abstract review process for the #VALT Symposium has been completed.
All submitters have received notification of their submission outcome!
The full list of accepted contributions will be published soon in the #VALT website (longtrec.eu/VALT/).
longtrec.eu
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📣Registration and abstract submission now open for the Long‑Read Sequencing Uppsala 2026 meeting, taking place November 2–4!
For abstract submission, registration, and the preliminary program, please visit the conference website:
👉 lrua.se
We are thrilled to release Bambu-pipe 🧬
🚀 A Nextflow pipeline built for speed, scalability, and precision — unlocking isoform-level insights from long-read single-cell and spatial RNA-seq data💡
🔗 GitHub: github.com/GoekeLab/bambu-pipe
📄 Preprint: doi.org/10.1101/2024.12.30.630828
LongcallR for competitive SNP calling and haplotype phasing, and simplified allele-specific analysis with long RNA-seq reads. Found ~100 junctions affected by SNPs per sample with most junctions novel.
Developed by Neng Huang. Published in @natmethods.nature.com. Read at rdcu.be/faKhL
A new preprint comparing short and long-read technologies for human WGS www.biorxiv.org/content/10.6...
Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu - GoekeLab/bambu-pipe
