Postdoc researcher at Institut Pasteur | Bacterial genomics | Evolution, ecology and diversity of bacterial populations
Jose F. Delgado-Blas
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Dear #AMR #genomics and big data community: please be informed that the programme of the Wellcome AMR conference in Hinxton on March 23-26th is now online: coursesandconferences.wellcomeconnectingscience.org/event/antimi... - please register before Feb 24th for onsite participation
The 1st Klebsiella Epidemiology and Biology Symposium in 2024 was much needed and a great event, so I'm really looking forward to the 2nd in 2027.
Bacteria chromosomes contain Genomic Islands that provide virulence, antibiotic resistance, MGE-defence,... They transfer between cells, but the mechanism of most remains elusive.
Here we explore the conjugative capacity of these mysterious Genomic Islands.
www.biorxiv.org/content/10.6...
Highlighting the importance of genomic data in the fight against AMR
Are you a post-doctoral microbiologist interested in characterising bacterial resistance evolution and want to apply your knowledge and expertise to developing new therapeutics for Klebsiella (and other Enterobacterales) infections? Then we need you! Apply now bit.ly/3MX39Ce close date March 13th 👀
A novel version of diphtOscan is available at gitlab.pasteur.fr/BEBP/diphtos.... v2.2.0 makes it easy to install on local computers. diphtOscan scans genomes and extracts information including #diphtheria toxin and antimicrobial resistance genes, biovar, species and subtyping information.
It's out! The LIN code approach for genomic taxonomy of microbial strains and its applications in genomic epidemiology journals.plos.org/plosbiology/...
🧫 Our publication,“Global perspectives on Klebsiella epidemiology and biology: conference report on the KLEBS 2024 symposium,” is now out!
📄 Link to paper: www.nature.com/articles/s44...
@kelwyres.bsky.social @katholt.bsky.social @sylvainbrisse.bsky.social @pasteur.fr
Unified bacterial strain taxonomies are needed for coherent communication of findings in microbiological research. This Essay provides an overview of a novel bacterial strain taxonomy and describes ho...
journals.plos.org
sylvain Brisse
www.nature.com
BIGSdb v1.52.1 has been released. This adds 2 new plugins for LIN code visualisation - LINtree (@giphy-ip.bsky.social) and LINvis. See github.com/kjolley/BIGS... for release notes. BIGSdb powers all the databases at @pubmlst.org and BIGSdb Pasteur.
sylvain Brisse
Professor Lesley Hoyles
🚨 Last few days to register for our Nanopore Users Day 2026!
Registration is free but mandatory, as places are limited, don’t miss out!
Join us for a day of scientific exchanges and networking focused on ONT sequencing and its applications!
@chloebaum.bsky.social @pasteur.fr @nanoporetech.com
Manuel Ares-Arroyo
Chiara Crestani
Chiara Crestani
Keith Jolley
📢 Registration for the Nanopore Users Day 2026 is now OPEN!
Registration is free but mandatory
🗓️ 10 March 2026
📍Institut Pasteur Paris
Make sure to secure your spot, see you there!
👉 www.eventbrite.com/e/billets-na...
@chcrestani.bsky.social @pasteur.fr @nanoporetech.com @nebiolabs.bsky.social
